PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513093.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 417aa    MW: 47104 Da    PI: 9.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-065476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_016513093.1 54 YVCEICNQGFQRDQNLQMHRRRH 76
                    9*********************9 PP

2zf-C2H215.54.8e-05131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k +  +s++k H++t+
  XP_016513093.1 131 WVCDKCSKGYAVQSDYKAHLKTC 153
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-55376No hitNo description
PROSITE profilePS5015710.975476IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-55476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359056136IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035519095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-4122152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-5126151No hitNo description
SMARTSM0035565131158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLSINNPNSS SDPFTSSENG NNCNRRKRRP AGTPDPDAEV VSLSPKTLLE SDQYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
FSRLRSDSKS LQPTPCLSRT ASSPTPSSDT NLTTVPWPSF LISNKPKTFL KNDVKQHNLE  240
LQLLTTTTTT TSLSSPFDIS VSSKPNDGHS THLQLSIGSS DFNEKNDSEN DTHKSRNGPN  300
LDVSLTLKDE ARERLSQAMA EKAYAEEARK QAKRQIELAE QEFANAKRIR RQAQGELEKA  360
QALKEQAIRQ INSTLSQITC HVCKQQFQAK RIATTSIVPS YDMRLSHISS GLTEHKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-130HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765149.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_016513093.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-144IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A061GQZ70.0A0A061GQZ7_THECC; C2H2-like zinc finger protein
STRINGPOPTR_0012s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-144C2H2-like zinc finger protein